Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
rpfG_3Cyclic di-GMP phosphodiesterase response regulator RpfG. (344 aa)    
Predicted Functional Partners:
ydaM_2
Putative diguanylate cyclase YdaM.
   0.936
gmr_7
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.753
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.751
ydaM_3
Putative diguanylate cyclase YdaM.
  0.732
cph2_2
Phytochrome-like protein cph2.
  
   0.723
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
   0.719
ydaM_1
Putative diguanylate cyclase YdaM.
   0.705
pleD_2
Response regulator PleD.
 
 0.705
cph2_1
Phytochrome-like protein cph2.
 
   
 0.698
ycdT_2
Putative diguanylate cyclase YcdT.
 
 
 0.692
Your Current Organism:
Andreesenia angusta
NCBI taxonomy Id: 39480
Other names: A. angusta, ATCC 43737, Eubacterium angustum, strain MK-1
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