STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (305 aa)    
Predicted Functional Partners:
EUAN_16650
ABC-2 family transporter protein.
 
 0.987
tauB
Taurine import ATP-binding protein TauB.
 
  
 
0.780
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB.
 
  
 
0.761
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC.
  
 
0.722
ybhR
Inner membrane transport permease YbhR.
 
 
 0.713
EUAN_02080
ABC-2 family transporter protein.
 
 
 0.696
modB_2
Molybdenum transport system permease protein ModB.
    
  0.681
EUAN_02090
ABC-2 family transporter protein.
 
 
 0.676
futA1
Iron uptake protein A1 precursor.
    
  0.617
xynA1_5
Endo-1,4-beta-xylanase A precursor.
       0.614
Your Current Organism:
Andreesenia angusta
NCBI taxonomy Id: 39480
Other names: A. angusta, ATCC 43737, Eubacterium angustum, strain MK-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.