STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_1Arabinose operon regulatory protein. (528 aa)    
Predicted Functional Partners:
yehU_3
Probable sensor-like histidine kinase YehU.
 
 
  0.934
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.829
luxQ_3
Autoinducer 2 sensor kinase/phosphatase luxQ.
   
 0.819
rpfC_3
Sensory/regulatory protein RpfC.
   
 0.819
cph2_7
Bacteriophytochrome cph2.
 
  
 0.801
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
   
 0.791
rpfG_4
Cyclic di-GMP phosphodiesterase response regulator RpfG.
   
 0.791
ycdT_2
Probable diguanylate cyclase YcdT.
   
 0.791
yehU_7
Probable sensor-like histidine kinase YehU.
  
 
  0.788
ytfQ_1
ABC transporter periplasmic-binding protein ytfQ precursor.
       0.773
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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