STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN90354.1Long-chain-fatty-acid--CoA ligase FadD15. (552 aa)    
Predicted Functional Partners:
gmk_1
Guanylate kinase.
    
  0.981
gmk_2
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.981
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.923
fadK
Short-chain-fatty-acid--CoA ligase.
 
 
0.905
mbtB_1
Phenyloxazoline synthase MbtB; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.903
gchK
Globin-coupled histidine kinase.
 
    0.897
acpP_2
Acyl carrier protein.
 
  
 0.894
srfAA
Surfactin synthase subunit 1; Belongs to the ATP-dependent AMP-binding enzyme family.
   
0.889
fadD
Long-chain-fatty-acid--CoA ligase.
 
 
0.834
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
     0.822
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.