CUN97149.1 protein (Faecalicatena contorta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUN97149.1

Relaxase/Mobilisation nuclease domain. (469 aa)

Predicted Functional Partners:

CUN97083.1

0.949

CUN97114.1

0.949

CUN97162.1

0.949

traG_1

0.940

CUN96984.1

0.936

CUN97265.1

0.908

CUN96914.1

0.896

CUN96876.1

0.887

CUN96841.1

0.885

CUN97374.1

0.832

Your Current Organism:

Faecalicatena contorta

NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUN96841.1	CUN96876.1	ERS852491_00941	ERS852491_00942	Type IV secretory pathway%2C VirB4 components.	PrgI family protein.	0.949
CUN96841.1	CUN96914.1	ERS852491_00941	ERS852491_00943	Type IV secretory pathway%2C VirB4 components.	Uncharacterised protein.	0.944
CUN96841.1	CUN96984.1	ERS852491_00941	ERS852491_00945	Type IV secretory pathway%2C VirB4 components.	Uncharacterised protein.	0.898
CUN96841.1	CUN97083.1	ERS852491_00941	ERS852491_00948	Type IV secretory pathway%2C VirB4 components.	Uncharacterised protein.	0.878
CUN96841.1	CUN97114.1	ERS852491_00941	ERS852491_00949	Type IV secretory pathway%2C VirB4 components.	Protein of uncharacterised function (DUF3801).	0.883
CUN96841.1	CUN97149.1	ERS852491_00941	ERS852491_00950	Type IV secretory pathway%2C VirB4 components.	Relaxase/Mobilisation nuclease domain.	0.885
CUN96841.1	CUN97162.1	ERS852491_00941	ERS852491_00951	Type IV secretory pathway%2C VirB4 components.	Uncharacterised protein.	0.882
CUN96841.1	CUN97265.1	ERS852491_00941	ERS852491_00954	Type IV secretory pathway%2C VirB4 components.	Uncharacterised protein.	0.844
CUN96841.1	CUN97374.1	ERS852491_00941	ERS852491_00958	Type IV secretory pathway%2C VirB4 components.	DNA methylase.	0.813
CUN96841.1	traG_1	ERS852491_00941	ERS852491_00946	Type IV secretory pathway%2C VirB4 components.	Conjugal transfer protein traG.	0.901
CUN96876.1	CUN96841.1	ERS852491_00942	ERS852491_00941	PrgI family protein.	Type IV secretory pathway%2C VirB4 components.	0.949
CUN96876.1	CUN96914.1	ERS852491_00942	ERS852491_00943	PrgI family protein.	Uncharacterised protein.	0.982
CUN96876.1	CUN96984.1	ERS852491_00942	ERS852491_00945	PrgI family protein.	Uncharacterised protein.	0.905
CUN96876.1	CUN97083.1	ERS852491_00942	ERS852491_00948	PrgI family protein.	Uncharacterised protein.	0.891
CUN96876.1	CUN97114.1	ERS852491_00942	ERS852491_00949	PrgI family protein.	Protein of uncharacterised function (DUF3801).	0.893
CUN96876.1	CUN97149.1	ERS852491_00942	ERS852491_00950	PrgI family protein.	Relaxase/Mobilisation nuclease domain.	0.887
CUN96876.1	CUN97162.1	ERS852491_00942	ERS852491_00951	PrgI family protein.	Uncharacterised protein.	0.893
CUN96876.1	CUN97265.1	ERS852491_00942	ERS852491_00954	PrgI family protein.	Uncharacterised protein.	0.852
CUN96876.1	CUN97374.1	ERS852491_00942	ERS852491_00958	PrgI family protein.	DNA methylase.	0.790
CUN96876.1	traG_1	ERS852491_00942	ERS852491_00946	PrgI family protein.	Conjugal transfer protein traG.	0.899