Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUO05137.1 | CUO05169.1 | ERS852491_01143 | ERS852491_01144 | Uncharacterised protein. | Uncharacterised protein. | 0.773 |
CUO05137.1 | CUO05197.1 | ERS852491_01143 | ERS852491_01145 | Uncharacterised protein. | DNA repair protein RadA. | 0.723 |
CUO05137.1 | immR_5 | ERS852491_01143 | ERS852491_01142 | Uncharacterised protein. | HTH-type transcriptional regulator immR. | 0.511 |
CUO05169.1 | CUO05137.1 | ERS852491_01144 | ERS852491_01143 | Uncharacterised protein. | Uncharacterised protein. | 0.773 |
CUO05169.1 | CUO05197.1 | ERS852491_01144 | ERS852491_01145 | Uncharacterised protein. | DNA repair protein RadA. | 0.723 |
CUO05169.1 | immR_5 | ERS852491_01144 | ERS852491_01142 | Uncharacterised protein. | HTH-type transcriptional regulator immR. | 0.511 |
CUO05197.1 | CUO05137.1 | ERS852491_01145 | ERS852491_01143 | DNA repair protein RadA. | Uncharacterised protein. | 0.723 |
CUO05197.1 | CUO05169.1 | ERS852491_01145 | ERS852491_01144 | DNA repair protein RadA. | Uncharacterised protein. | 0.723 |
CUO05197.1 | immR_5 | ERS852491_01145 | ERS852491_01142 | DNA repair protein RadA. | HTH-type transcriptional regulator immR. | 0.535 |
CUO05197.1 | ispD_1 | ERS852491_01145 | ERS852491_02246 | DNA repair protein RadA. | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. | 0.539 |
CUO05197.1 | metG | ERS852491_01145 | ERS852491_03707 | DNA repair protein RadA. | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.488 |
CUO05197.1 | pcrA_1 | ERS852491_01145 | ERS852491_02153 | DNA repair protein RadA. | ATP-dependent DNA helicase pcrA. | 0.486 |
CUO05197.1 | recA | ERS852491_01145 | ERS852491_04285 | DNA repair protein RadA. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.779 |
CUO05197.1 | recX | ERS852491_01145 | ERS852491_04286 | DNA repair protein RadA. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.789 |
CUO05197.1 | rpoD | ERS852491_01145 | ERS852491_01148 | DNA repair protein RadA. | RNA polymerase sigma factor rpoD; Belongs to the sigma-70 factor family. | 0.508 |
CUO05197.1 | uvrC | ERS852491_01145 | ERS852491_02225 | DNA repair protein RadA. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.509 |
immR_5 | CUO05137.1 | ERS852491_01142 | ERS852491_01143 | HTH-type transcriptional regulator immR. | Uncharacterised protein. | 0.511 |
immR_5 | CUO05169.1 | ERS852491_01142 | ERS852491_01144 | HTH-type transcriptional regulator immR. | Uncharacterised protein. | 0.511 |
immR_5 | CUO05197.1 | ERS852491_01142 | ERS852491_01145 | HTH-type transcriptional regulator immR. | DNA repair protein RadA. | 0.535 |
immR_5 | recA | ERS852491_01142 | ERS852491_04285 | HTH-type transcriptional regulator immR. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.951 |
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