STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
topB_2DNA topoisomerase 3. (495 aa)    
Predicted Functional Partners:
recQ
ATP-dependent DNA helicase recQ.
 
 
 0.995
porA
Pyruvate synthase subunit porA.
  
   0.934
sbcC
Nuclease sbcCD subunit C.
  
 0.926
CUO18095.1
Predicted outer membrane protein.
 
     0.809
CUO17968.1
Uncharacterised protein.
 
     0.805
CUO18039.1
Uncharacterised protein.
 
     0.783
CUP41477.1
Uncharacterised protein.
 
     0.750
CUP41282.1
Uncharacterised protein.
 
     0.748
cwlS_3
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS precursor.
 
  
 0.746
CUO36030.1
Uncharacterised protein.
 
     0.745
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.