STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
codB_4Cytosine permease. (438 aa)    
Predicted Functional Partners:
CUO40073.1
Uncharacterized conserved protein.
     0.951
CUO40034.1
Uncharacterized conserved protein.
 
     0.923
CUP12097.1
Uncharacterized conserved protein.
 
     0.777
CUN94303.1
Uncharacterized conserved protein.
 
     0.775
CUO40137.1
Carbohydrate diacid transcriptional activator CdaR.
 
     0.745
CUO40001.1
Hydantoin racemase.
 
     0.715
pyrB
Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.643
pyrI
Aspartate carbamoyltransferase regulatory chain.
   
    0.641
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
   
    0.621
acxA
Acetone carboxylase beta subunit.
 
     0.575
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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