STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicJInner membrane symporter yicJ. (459 aa)    
Predicted Functional Partners:
yihP_1
Inner membrane symporter yihP.
  
     0.770
lacZ_2
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.746
nrdA
Ribonucleoside-diphosphate reductase 1 subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.731
ebgA_2
Evolved beta-galactosidase subunit alpha.
 
  
 0.602
xynB_1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.475
araC_2
Arabinose operon regulatory protein.
 
     0.427
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.416
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.