STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_5L-rhamnose operon regulatory protein rhaS. (296 aa)    
Predicted Functional Partners:
ypdC_2
Uncharacterized HTH-type transcriptional regulator ypdC.
 
  
  0.803
araC_7
Arabinose operon regulatory protein.
  
  
  0.798
porA
Pyruvate synthase subunit porA.
     
 0.788
rhaS_3
L-rhamnose operon regulatory protein rhaS.
  
     0.774
btr_5
Bacillibactin transport regulator.
  
     0.774
adaA_4
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
     0.771
chbR_3
Chb operon repressor.
  
     0.771
melR_3
Melibiose operon regulatory protein.
  
     0.767
chbR_2
Chb operon repressor.
  
     0.766
marA
Multiple antibiotic resistance protein marA.
  
     0.765
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.