CUO78607.1 protein (Faecalicatena contorta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUO78607.1

Maltose-binding periplasmic proteins/domains. (447 aa)

Predicted Functional Partners:

ycjP_30

0.869

ugpA_24

0.841

ugpC

0.798

CUN59821.1

0.768

yesO_2

0.764

CUO66702.1

0.764

CUN94965.1

0.763

CUN68856.1

0.762

CUN95106.1

0.760

yesO_5

0.760

Your Current Organism:

Faecalicatena contorta

NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUN59821.1	CUN94965.1	ERS852491_00010	ERS852491_00890	Maltose-binding periplasmic proteins/domains.	Uncharacterized conserved protein.	0.404
CUN59821.1	CUN95106.1	ERS852491_00010	ERS852491_00894	Maltose-binding periplasmic proteins/domains.	Maltose-binding periplasmic proteins/domains.	0.772
CUN59821.1	CUO66702.1	ERS852491_00010	ERS852491_02906	Maltose-binding periplasmic proteins/domains.	Uncharacterized protein conserved in bacteria.	0.458
CUN59821.1	CUO78607.1	ERS852491_00010	ERS852491_03303	Maltose-binding periplasmic proteins/domains.	Maltose-binding periplasmic proteins/domains.	0.768
CUN59821.1	ugpA_24	ERS852491_00010	ERS852491_03302	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.517
CUN59821.1	ugpC	ERS852491_00010	ERS852491_03827	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.714
CUN59821.1	ycjP_30	ERS852491_00010	ERS852491_03301	Maltose-binding periplasmic proteins/domains.	Inner membrane ABC transporter permease protein ycjP.	0.572
CUN59821.1	yesO_2	ERS852491_00010	ERS852491_02905	Maltose-binding periplasmic proteins/domains.	Putative ABC transporter substrate-binding protein yesO.	0.732
CUN68856.1	CUO66702.1	ERS852491_00229	ERS852491_02906	Maltose-binding periplasmic proteins/domains.	Uncharacterized protein conserved in bacteria.	0.557
CUN68856.1	CUO78607.1	ERS852491_00229	ERS852491_03303	Maltose-binding periplasmic proteins/domains.	Maltose-binding periplasmic proteins/domains.	0.762
CUN68856.1	ugpA_24	ERS852491_00229	ERS852491_03302	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.524
CUN68856.1	ugpC	ERS852491_00229	ERS852491_03827	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.709
CUN68856.1	ycjP_30	ERS852491_00229	ERS852491_03301	Maltose-binding periplasmic proteins/domains.	Inner membrane ABC transporter permease protein ycjP.	0.559
CUN68856.1	yesO_2	ERS852491_00229	ERS852491_02905	Maltose-binding periplasmic proteins/domains.	Putative ABC transporter substrate-binding protein yesO.	0.743
CUN94965.1	CUN59821.1	ERS852491_00890	ERS852491_00010	Uncharacterized conserved protein.	Maltose-binding periplasmic proteins/domains.	0.404
CUN94965.1	CUN95106.1	ERS852491_00890	ERS852491_00894	Uncharacterized conserved protein.	Maltose-binding periplasmic proteins/domains.	0.656
CUN94965.1	CUO66702.1	ERS852491_00890	ERS852491_02906	Uncharacterized conserved protein.	Uncharacterized protein conserved in bacteria.	0.774
CUN94965.1	CUO78607.1	ERS852491_00890	ERS852491_03303	Uncharacterized conserved protein.	Maltose-binding periplasmic proteins/domains.	0.763
CUN94965.1	yesO_2	ERS852491_00890	ERS852491_02905	Uncharacterized conserved protein.	Putative ABC transporter substrate-binding protein yesO.	0.704
CUN94965.1	yesO_5	ERS852491_00890	ERS852491_04903	Uncharacterized conserved protein.	Putative ABC transporter substrate-binding protein yesO.	0.421