STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA_9Ribose import ATP-binding protein RbsA. (506 aa)    
Predicted Functional Partners:
rbsC_16
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  0.939
lsrD_5
Autoinducer 2 import system permease protein lsrD; Belongs to the binding-protein-dependent transport system permease family.
  0.932
CUO86630.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
   
  0.885
rbsC_13
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.804
rbsC_18
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.800
rbsC_19
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.797
rbsC_20
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.796
rbsC_8
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
  
  0.795
rbsC_9
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.790
rbsC_5
Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  0.777
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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