STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP00499.1ABC transporter efflux protein%2C DrrB family. (247 aa)    
Predicted Functional Partners:
CUP00470.1
Fluoroquinolones export ATP-binding protein Rv2688c/MT2762.
 
 
 0.972
cueR
Copper export regulator.
 
     0.906
ybhF_7
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
 
 0.881
mutM
Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
 
     0.630
kpsM
Polysialic acid transport protein kpsM.
    
  0.607
CUP24355.1
Uncharacterised protein.
  
     0.603
CUO61264.1
CAAX amino terminal protease self-immunity.
  
  
 0.586
drrA_4
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
 0.567
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.553
CUP24385.1
Uncharacterised protein.
  
     0.524
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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