STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccSInner membrane protein yccS. (562 aa)    
Predicted Functional Partners:
rpfG_4
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
   0.779
CUP22589.1
Transcriptional regulator NanR.
  
     0.772
CUN91114.1
FeS cluster assembly scaffold protein NifU.
   
    0.744
nifU
NifU-like protein.
   
    0.744
bpr
Bacillopeptidase F precursor.
  
     0.738
rpfC_3
Sensory/regulatory protein RpfC.
  
     0.734
CUO78324.1
DNA-binding transcriptional repressor ExuR.
  
     0.722
arcB_2
Aerobic respiration control sensor protein ArcB.
 
   
 0.710
ygeA
Putative racemase; Belongs to the aspartate/glutamate racemases family.
   
    0.685
barA_2
Signal transduction histidine-protein kinase BarA.
  
     0.680
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.