STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP05669.1Helix-turn-helix. (188 aa)    
Predicted Functional Partners:
CUP05649.1
Replication initiation factor.
     0.989
CUO60447.1
Replication initiation factor.
 
     0.976
CUP05715.1
Bacterial protein of uncharacterised function (DUF961).
 
   
 0.882
CUP05740.1
Bacterial protein of uncharacterised function (DUF961).
 
    0.868
CUO55121.1
Uncharacterised protein.
 
  
 0.825
CUO60405.1
Uncharacterised protein.
 
  
 0.825
CUO60333.1
Antirestriction protein.
 
  
 0.820
CUO54996.1
Type IV secretory pathway%2C VirB4 components.
 
    0.819
CUO55054.1
Antirestriction protein.
 
  
 0.818
ftsK
DNA translocase FtsK.
 
    0.818
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.