STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacB_3D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family. (310 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase dacC precursor; Belongs to the peptidase S11 family.
 
  
 
0.837
dacB_4
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
  
  
 
0.834
CUN99181.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.790
CUO93188.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
   
 
 0.785
mrcA_1
Penicillin-binding protein 1A.
   
 
 0.769
mrcA_2
Penicillin-binding protein 1A.
   
 
 0.769
iap_4
Probable endopeptidase p60 precursor.
  
 
 0.584
cwlS_3
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS precursor.
  
 
 0.584
cusS
Sensor kinase CusS.
 
  
 0.550
CUO83321.1
Probable endopeptidase cgR_2070 precursor.
    
 0.543
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.