CUP24385.1 protein (Faecalicatena contorta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUP24385.1

Uncharacterised protein. (180 aa)

Predicted Functional Partners:

CUP24355.1

0.951

CUP14986.1

0.600

CUP40001.1

0.581

CUP24433.1

0.541

CUP00499.1

0.524

hsaD

0.492

CUO41688.1

0.489

CUP12722.1

0.464

CUP24408.1

0.462

CUP03970.1

0.441

Your Current Organism:

Faecalicatena contorta

NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUO41688.1	CUP24355.1	ERS852491_02148	ERS852491_04637	ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.	Uncharacterised protein.	0.432
CUO41688.1	CUP24385.1	ERS852491_02148	ERS852491_04638	ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.	Uncharacterised protein.	0.489
CUP00499.1	CUP14986.1	ERS852491_03984	ERS852491_04393	ABC transporter efflux protein%2C DrrB family.	Glyoxalase-like domain.	0.503
CUP00499.1	CUP24355.1	ERS852491_03984	ERS852491_04637	ABC transporter efflux protein%2C DrrB family.	Uncharacterised protein.	0.603
CUP00499.1	CUP24385.1	ERS852491_03984	ERS852491_04638	ABC transporter efflux protein%2C DrrB family.	Uncharacterised protein.	0.524
CUP03970.1	CUP24385.1	ERS852491_04088	ERS852491_04638	Acidobacterial duplicated orphan permease.	Uncharacterised protein.	0.441
CUP03970.1	CUP40001.1	ERS852491_04088	ERS852491_05059	Acidobacterial duplicated orphan permease.	Transcriptional regulator%2C Acidobacterial%2C PadR-family.	0.523
CUP12722.1	CUP24385.1	ERS852491_04337	ERS852491_04638	Fosfomycin resistance protein FosB.	Uncharacterised protein.	0.464
CUP14986.1	CUP00499.1	ERS852491_04393	ERS852491_03984	Glyoxalase-like domain.	ABC transporter efflux protein%2C DrrB family.	0.503
CUP14986.1	CUP24355.1	ERS852491_04393	ERS852491_04637	Glyoxalase-like domain.	Uncharacterised protein.	0.426
CUP14986.1	CUP24385.1	ERS852491_04393	ERS852491_04638	Glyoxalase-like domain.	Uncharacterised protein.	0.600
CUP14986.1	CUP40001.1	ERS852491_04393	ERS852491_05059	Glyoxalase-like domain.	Transcriptional regulator%2C Acidobacterial%2C PadR-family.	0.450
CUP24355.1	CUO41688.1	ERS852491_04637	ERS852491_02148	Uncharacterised protein.	ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.	0.432
CUP24355.1	CUP00499.1	ERS852491_04637	ERS852491_03984	Uncharacterised protein.	ABC transporter efflux protein%2C DrrB family.	0.603
CUP24355.1	CUP14986.1	ERS852491_04637	ERS852491_04393	Uncharacterised protein.	Glyoxalase-like domain.	0.426
CUP24355.1	CUP24385.1	ERS852491_04637	ERS852491_04638	Uncharacterised protein.	Uncharacterised protein.	0.951
CUP24355.1	CUP24408.1	ERS852491_04637	ERS852491_04639	Uncharacterised protein.	Uncharacterised protein.	0.415
CUP24355.1	CUP24433.1	ERS852491_04637	ERS852491_04640	Uncharacterised protein.	Protein of uncharacterised function (DUF3795).	0.449
CUP24385.1	CUO41688.1	ERS852491_04638	ERS852491_02148	Uncharacterised protein.	ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.	0.489
CUP24385.1	CUP00499.1	ERS852491_04638	ERS852491_03984	Uncharacterised protein.	ABC transporter efflux protein%2C DrrB family.	0.524