STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP37441.1Outer membrane-specific lipoprotein transporter subunit LolC. (875 aa)    
Predicted Functional Partners:
lolD_12
Lipoprotein-releasing system ATP-binding protein LolD.
 
  0.966
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.884
lolD_4
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.880
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.854
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.841
phoR_15
Alkaline phosphatase synthesis sensor protein phoR.
 
     0.829
lolD_8
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.808
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
  0.803
lolD_10
Lipoprotein-releasing system ATP-binding protein LolD.
  
  0.796
phoR_6
Phosphate regulon sensor protein phoR.
  
     0.769
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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