STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_1Alkaline phosphatase synthesis sensor protein phoR. (437 aa)    
Predicted Functional Partners:
regX3_1
Sensory transduction protein regX3.
   0.963
srrA_2
Staphylococcal respiratory response protein A.
 
 0.863
barA
Signal transduction histidine-protein kinase BarA.
    0.857
yycF_1
Transcriptional regulatory protein YycF.
   0.819
srrA_3
Staphylococcal respiratory response protein A.
   0.818
mprA_2
Mycobacterial persistence regulator A.
   0.813
mprA_1
Mycobacterial persistence regulator A.
   0.811
hssR
Heme response regulator hssR.
   0.807
regX3_2
Sensory transduction protein regX3.
   0.795
yycF_2
Transcriptional regulatory protein YycF.
 
 0.792
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.