STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bvgSVirulence sensor protein BvgS precursor. (657 aa)    
Predicted Functional Partners:
mprA_2
Mycobacterial persistence regulator A.
   0.873
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.809
CUN67459.1
Hpt domain.
 
 
 0.774
ydaM
Probable diguanylate cyclase YdaM.
 
 0.636
CUP16660.1
Uncharacterised protein.
   
 
 0.629
gmr
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.627
adrA_1
Probable diguanylate cyclase AdrA.
   0.588
CUN47259.1
Recombination protein F.
  
     0.550
srrA_1
Staphylococcal respiratory response protein A.
   0.549
regX3_2
Sensory transduction protein regX3.
 
   0.542
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.