CUO40219.1 protein (Anaerobutyricum hallii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUO40219.1

Predicted nucleotidyltransferases. (384 aa)

Predicted Functional Partners:

CUO40028.1

0.961

hsdR_3

0.945

CUN59355.1

0.913

hsdR_1

0.882

hsdM

0.827

CUN59403.1

0.677

CUO40263.1

0.643

CUO01836.1

0.635

CUO55612.1

0.593

CUO78411.1

0.593

Your Current Organism:

Anaerobutyricum hallii

NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUN59355.1	CUN59403.1	ERS852450_00280	ERS852450_00281	Probable type I restriction enzyme BthVORF4518P M protein.	EcoKI restriction-modification system protein HsdS.	0.980
CUN59355.1	CUO40219.1	ERS852450_00280	ERS852450_01739	Probable type I restriction enzyme BthVORF4518P M protein.	Predicted nucleotidyltransferases.	0.913
CUN59355.1	hsdR_1	ERS852450_00280	ERS852450_00283	Probable type I restriction enzyme BthVORF4518P M protein.	Type-1 restriction enzyme R protein.	0.968
CUN59355.1	hsdR_3	ERS852450_00280	ERS852450_01741	Probable type I restriction enzyme BthVORF4518P M protein.	Type-1 restriction enzyme R protein.	0.923
CUN59403.1	CUN59355.1	ERS852450_00281	ERS852450_00280	EcoKI restriction-modification system protein HsdS.	Probable type I restriction enzyme BthVORF4518P M protein.	0.980
CUN59403.1	CUO01836.1	ERS852450_00281	ERS852450_01015	EcoKI restriction-modification system protein HsdS.	Probable type I restriction enzyme BthVORF4518P M protein.	0.728
CUN59403.1	CUO40028.1	ERS852450_00281	ERS852450_01737	EcoKI restriction-modification system protein HsdS.	Probable type I restriction enzyme BthVORF4518P M protein.	0.918
CUN59403.1	CUO40219.1	ERS852450_00281	ERS852450_01739	EcoKI restriction-modification system protein HsdS.	Predicted nucleotidyltransferases.	0.677
CUN59403.1	CUO55612.1	ERS852450_00281	ERS852450_01984	EcoKI restriction-modification system protein HsdS.	DNA methylase.	0.593
CUN59403.1	CUO78411.1	ERS852450_00281	ERS852450_02420	EcoKI restriction-modification system protein HsdS.	Uncharacterised protein.	0.593
CUN59403.1	hsdM	ERS852450_00281	ERS852450_00121	EcoKI restriction-modification system protein HsdS.	Type I restriction enzyme EcoKI M protein.	0.892
CUN59403.1	hsdR_1	ERS852450_00281	ERS852450_00283	EcoKI restriction-modification system protein HsdS.	Type-1 restriction enzyme R protein.	0.946
CUN59403.1	hsdR_3	ERS852450_00281	ERS852450_01741	EcoKI restriction-modification system protein HsdS.	Type-1 restriction enzyme R protein.	0.869
CUO01836.1	CUN59403.1	ERS852450_01015	ERS852450_00281	Probable type I restriction enzyme BthVORF4518P M protein.	EcoKI restriction-modification system protein HsdS.	0.728
CUO01836.1	CUO40219.1	ERS852450_01015	ERS852450_01739	Probable type I restriction enzyme BthVORF4518P M protein.	Predicted nucleotidyltransferases.	0.635
CUO01836.1	hsdR_1	ERS852450_01015	ERS852450_00283	Probable type I restriction enzyme BthVORF4518P M protein.	Type-1 restriction enzyme R protein.	0.673
CUO01836.1	hsdR_3	ERS852450_01015	ERS852450_01741	Probable type I restriction enzyme BthVORF4518P M protein.	Type-1 restriction enzyme R protein.	0.673
CUO40028.1	CUN59403.1	ERS852450_01737	ERS852450_00281	Probable type I restriction enzyme BthVORF4518P M protein.	EcoKI restriction-modification system protein HsdS.	0.918
CUO40028.1	CUO40219.1	ERS852450_01737	ERS852450_01739	Probable type I restriction enzyme BthVORF4518P M protein.	Predicted nucleotidyltransferases.	0.961
CUO40028.1	CUO40263.1	ERS852450_01737	ERS852450_01740	Probable type I restriction enzyme BthVORF4518P M protein.	Uncharacterised protein.	0.492