STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsB_2D-ribose-binding periplasmic protein precursor. (345 aa)    
Predicted Functional Partners:
rbsC
Ribose transport system permease protein rbsC.
 
 0.993
CUP16660.1
Uncharacterised protein.
   
 
 0.966
rpfC_1
Sensory/regulatory protein RpfC.
   
 
 0.962
rpfC_3
Sensory/regulatory protein RpfC.
   
 
 0.962
rpfC_4
Sensory/regulatory protein RpfC.
   
 
 0.962
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.930
rbsD
D-ribose pyranase.
 
  
 0.880
CUO65389.1
Predicted periplasmic lipoprotein.
 
    0.880
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.851
rbsK
Ribokinase.
 
  
 0.770
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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