STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO70917.1Acidobacterial duplicated orphan permease. (814 aa)    
Predicted Functional Partners:
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.973
senX3_2
Signal-transduction histidine kinase senX3.
 
    0.896
yycF_3
Transcriptional regulatory protein YycF.
 
     0.872
CUO10295.1
Transcriptional repressor DicA.
  
     0.750
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.736
CUO75430.1
Maltose-binding periplasmic proteins/domains.
  
     0.734
CUO52258.1
Conjugal transfer relaxase TraA.
 
     0.694
lolD
Lipoprotein-releasing system ATP-binding protein LolD.
  
 
 0.678
fbpC_3
Fe(3+) ions import ATP-binding protein FbpC.
  
 
 0.678
macB_2
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.678
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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