STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoDPutative HMP/thiamine import ATP-binding protein YkoD. (593 aa)    
Predicted Functional Partners:
CUO94790.1
Predicted membrane protein.
     0.994
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT.
 
 0.979
CUO94906.1
Uncharacterised protein.
 
     0.889
cgkA_2
Kappa-carrageenase precursor.
 
    0.859
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
 
 0.850
CUO94971.1
Uncharacterised protein.
 
    0.791
gsiA_1
Glutathione import ATP-binding protein GsiA.
 
  
0.721
nikQ
Energy-coupling factor transporter transmembrane protein NikQ.
  
 
 0.620
cbiQ
Energy-coupling factor transporter transmembrane protein CbiQ.
  
 
 0.620
CUO94745.1
Endonuclease IV.
 
     0.577
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.