STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwlCSporulation-specific N-acetylmuramoyl-L-alanine amidase. (382 aa)    
Predicted Functional Partners:
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein phoP.
  
    0.525
CUO18588.1
Uncharacterised protein.
  
   0.495
gluP
Rhomboid protease gluP.
  
   0.495
amiC_2
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
 
    
0.478
pbpD_2
Penicillin-binding protein 4 precursor.
  
 
 
 0.476
murAB
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.462
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
  
    0.454
yceG
Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.432
pbpD_1
Penicillin-binding protein 4 precursor.
  
 
 
 0.431
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
 
     0.430
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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