Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUP20007.1 | CUP20082.1 | ERS852450_03247 | ERS852450_03249 | Uncharacterized protein conserved in bacteria. | Protein of uncharacterised function (DUF1189). | 0.496 |
| CUP20007.1 | yajL | ERS852450_03247 | ERS852450_03248 | Uncharacterized protein conserved in bacteria. | Chaperone protein YajL. | 0.879 |
| CUP20082.1 | CUP20007.1 | ERS852450_03249 | ERS852450_03247 | Protein of uncharacterised function (DUF1189). | Uncharacterized protein conserved in bacteria. | 0.496 |
| CUP20082.1 | CUP20168.1 | ERS852450_03249 | ERS852450_03251 | Protein of uncharacterised function (DUF1189). | Sortase (surface protein transpeptidase). | 0.497 |
| CUP20082.1 | cobU | ERS852450_03249 | ERS852450_03250 | Protein of uncharacterised function (DUF1189). | Adenosylcobinamide kinase. | 0.501 |
| CUP20082.1 | yajL | ERS852450_03249 | ERS852450_03248 | Protein of uncharacterised function (DUF1189). | Chaperone protein YajL. | 0.757 |
| CUP20168.1 | CUP20082.1 | ERS852450_03251 | ERS852450_03249 | Sortase (surface protein transpeptidase). | Protein of uncharacterised function (DUF1189). | 0.497 |
| CUP20168.1 | cobU | ERS852450_03251 | ERS852450_03250 | Sortase (surface protein transpeptidase). | Adenosylcobinamide kinase. | 0.768 |
| CUP20168.1 | yajL | ERS852450_03251 | ERS852450_03248 | Sortase (surface protein transpeptidase). | Chaperone protein YajL. | 0.487 |
| cobU | CUP20082.1 | ERS852450_03250 | ERS852450_03249 | Adenosylcobinamide kinase. | Protein of uncharacterised function (DUF1189). | 0.501 |
| cobU | CUP20168.1 | ERS852450_03250 | ERS852450_03251 | Adenosylcobinamide kinase. | Sortase (surface protein transpeptidase). | 0.768 |
| cobU | yajL | ERS852450_03250 | ERS852450_03248 | Adenosylcobinamide kinase. | Chaperone protein YajL. | 0.500 |
| rplE | rplM | ERS852450_00559 | ERS852450_02845 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplE | rplN | ERS852450_00559 | ERS852450_00561 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplE | rpsJ | ERS852450_00559 | ERS852450_00572 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | BS13; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rplE | rpsS | ERS852450_00559 | ERS852450_00567 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | BS17; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rplE | tuf | ERS852450_00559 | ERS852450_00674 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.998 |
| rplE | yajL | ERS852450_00559 | ERS852450_03248 | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Chaperone protein YajL. | 0.529 |
| rplM | rplE | ERS852450_02845 | ERS852450_00559 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
| rplM | rplN | ERS852450_02845 | ERS852450_00561 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
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