STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM92048.1DNA-binding transcriptional activator of the SARP family. (416 aa)    
Predicted Functional Partners:
CUM92068.1
Uncharacterised protein.
 
     0.912
CUM92089.1
Uncharacterised protein.
 
     0.844
CUM92026.1
Uncharacterized protein involved in cytokinesis%2C contains TGc (transglutaminase/protease-like) domain.
 
     0.842
CUM91986.1
Uncharacterised protein.
 
     0.819
CUM91961.1
Uncharacterised protein.
 
     0.817
CUM91940.1
Uncharacterised protein.
 
     0.767
CUM91919.1
Uncharacterised protein.
 
     0.758
CUM92129.1
Predicted outer membrane protein.
 
     0.681
epsF
Cholera toxin secretion protein epsF.
 
     0.584
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
     0.530
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.