STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltD_4Glutamate synthase [NADPH] small chain. (612 aa)    
Predicted Functional Partners:
CUM75284.1
Iron hydrogenase 1.
 0.998
porA_1
Pyruvate synthase subunit porA.
  
 0.994
gltB
Ferredoxin-dependent glutamate synthase 1.
 0.994
fdhF
Formate dehydrogenase H.
 0.992
nqo2
NADH-quinone oxidoreductase subunit 2.
  
 0.987
lgrD
Linear gramicidin synthase subunit D.
  
 0.980
CUN18251.1
Ferredoxin.
  
 0.969
pyrD
Dihydroorotate dehydrogenase B (NAD(+))%2C catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
 
 0.958
nqo1
NADH-quinone oxidoreductase subunit 1.
  
 
0.952
hydA_2
Periplasmic [Fe] hydrogenase large subunit.
    
0.951
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.