STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN05914.1sortase%2C SrtB family. (248 aa)    
Predicted Functional Partners:
CUN05892.1
Pilus backbone structural protein.
 
     0.907
spsB
Signal peptidase IB; Belongs to the peptidase S26 family.
 
     0.794
CUN05934.1
Streptococcal pilin isopeptide linkage domain.
   
   0.673
CUN05845.1
Uncharacterised protein.
 
     0.481
CUN27999.1
ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.
  
     0.417
ydgH
Putative membrane protein ydgH.
  
     0.406
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.