STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN08011.1Macrolide transporter ATP-binding /permease protein. (826 aa)    
Predicted Functional Partners:
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
 
  0.942
cssS
Sensor histidine kinase CssS.
 
     0.865
arlR_1
Response regulator ArlR.
 
     0.707
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
  0.668
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
  0.627
macB_9
Macrolide export ATP-binding/permease protein MacB.
 
  0.608
CUN08583.1
Uncharacterised protein.
  
     0.589
macB_1
Macrolide export ATP-binding/permease protein MacB.
   
  0.522
macB_2
Macrolide export ATP-binding/permease protein MacB.
   
  0.522
ftsE_1
Cell division ATP-binding protein FtsE.
   
  0.522
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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