STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIID_214 kDa transcription factor. (43 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.807
CUM91060.1
SpoIIIAH-like protein.
  
  
 0.792
CUN00529.1
Domain of uncharacterised function (DUF3794).
  
  
 0.769
ssbB
Single-stranded DNA-binding protein ssbB.
  
     0.766
CUM77460.1
Stage II sporulation protein P.
  
  
 0.728
CUM91043.1
Stage III sporulation protein AG.
  
  
 0.688
CUN23948.1
Sporulation protein YqfD.
  
   
 0.650
spoIIIAC
Stage III sporulation protein AC.
  
  
 0.641
CUN21492.1
Spore cortex biosynthesis protein YabQ.
  
  
 0.616
CUM97308.1
Uncharacterized protein conserved in bacteria.
  
  
 0.615
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.