STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN22566.1Predicted HD superfamily hydrolase. (784 aa)    
Predicted Functional Partners:
CUN22575.1
CRISPR type III-A/MTUBE-associated protein Csm2.
 
 
 0.997
CUN22584.1
CRISPR type III-A/MTUBE-associated RAMP protein Csm3.
 
 
 0.996
CUN22593.1
CRISPR type III-A/MTUBE-associated RAMP protein Csm4.
 
 
 0.996
CUN22602.1
CRISPR type III-A/MTUBE-associated RAMP protein Csm5.
 
 
 0.996
CUN22556.1
CRISPR-associated endoribonuclease Cas6.
 
  
 0.965
CUN22640.1
CRISPR type III-A/MTUBE-associated protein Csm6.
 
  
 0.846
cas2-2
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.814
cas1-2
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.789
CUN25582.1
Uncharacterized conserved protein.
  
     0.611
CUM96272.1
Phage-related protein.
  
     0.597
Your Current Organism:
Eubacterium ramulus
NCBI taxonomy Id: 39490
Other names: ATCC 29099, DSM 3995, E. ramulus
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