STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ82446.1DNA utilization protein GntX. (220 aa)    
Predicted Functional Partners:
CUQ92419.1
ComEC family competence protein.
 
  
 0.871
CUQ83676.1
Late competence development protein ComFB.
  
  
 0.851
smf
DNA protecting protein DprA.
 
 
 0.816
ykfG
DNA repair protein RadC.
 
    0.793
CUQ82443.1
Uncharacterised protein.
       0.781
comM
Competence protein ComM.
 
  
 0.748
tyrC
Arogenate dehydrogenase.
   
  
 0.696
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
    0.689
CUQ82440.1
Uncharacterised protein.
       0.686
CUQ87515.1
Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
 
    0.680
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.