STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ85122.1Dipicolinate synthase subunit B. (212 aa)    
Predicted Functional Partners:
spoVFA
Stage V sporulation protein FA.
 
  
 0.987
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.734
CUQ92791.1
Bacillus/Clostridium GerA spore germination protein.
  
     0.725
sigE
Stage II sporulation protein GB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.700
spoIVB
SpoIVB peptidase precursor.
  
    0.682
CUQ85588.1
Stage V sporulation protein AC.
  
   
 0.669
spoVT
Stage V sporulation protein T.
  
     0.658
spoIIE
Stage II sporulation protein E.
  
     0.597
CUQ85107.1
DNA alkylation repair enzyme.
       0.596
ogt
Methylated-DNA--protein-cysteine methyltransferase%2C constitutive.
       0.596
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.