STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ85786.1Sporulation protein%2C YlmC/YmxH family. (95 aa)    
Predicted Functional Partners:
CUQ86975.1
Stage II sporulation protein R.
 
     0.785
spoIIE
Stage II sporulation protein E.
  
     0.764
ytfJ
Uncharacterized spore protein ytfJ.
  
  
 0.752
CUQ87546.1
Clp protease.
 
     0.740
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.735
CUQ83618.1
Sporulation protein YqfD.
  
     0.733
CUQ83492.1
Stage III sporulation protein AE.
  
     0.726
CUQ92791.1
Bacillus/Clostridium GerA spore germination protein.
  
    0.723
CUQ80909.1
sigma-E processing peptidase SpoIIGA.
 
     0.719
CUQ85588.1
Stage V sporulation protein AC.
  
    0.719
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.