STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_2Alkaline phosphatase synthesis sensor protein phoR. (475 aa)    
Predicted Functional Partners:
regX3
Sensory transduction protein regX3.
 
 0.969
CUQ86050.1
Uncharacterised protein.
 
  
 0.888
cheR
Chemotaxis protein methyltransferase.
      0.886
srrA_1
Staphylococcal respiratory response protein A.
 
 0.837
yycF
Transcriptional regulatory protein YycF.
 
 0.830
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein phoP.
 
 0.827
arlR
Response regulator ArlR.
 
 0.824
hssR
Heme response regulator hssR.
 
 0.800
fixL
Sensor protein fixL.
  
 
 0.772
cheY_2
Chemotaxis protein CheY.
 
 
 0.760
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.