STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ86542.1Predicted signal transduction protein with a C-terminal ATPase domain. (464 aa)    
Predicted Functional Partners:
fixL
Sensor protein fixL.
     0.874
rcsC
Sensor kinase protein RcsC.
   
 
 0.735
yycF
Transcriptional regulatory protein YycF.
  
   0.687
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.482
dacB_1
D-alanyl-D-alanine carboxypeptidase dacB precursor; Belongs to the peptidase S11 family.
       0.474
CUQ81113.1
Chromosome segregation protein.
  
 
 0.461
cph2_2
Bacteriophytochrome cph2.
  
 
 0.450
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.447
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.447
phoR_3
Alkaline phosphatase synthesis sensor protein phoR.
 
 
 0.444
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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