STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsR_1Ribose operon repressor. (708 aa)    
Predicted Functional Partners:
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
 
     0.813
cytR_1
HTH-type transcriptional repressor CytR.
  
     0.773
cytR_2
HTH-type transcriptional repressor CytR.
  
     0.773
ccpA
Catabolite control protein.
  
     0.770
araR
Arabinose metabolism transcriptional repressor.
  
     0.758
CUQ85031.1
Type IV pilus assembly protein PilM.
 
     0.504
celA_4
Endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.453
fruA
EIIABC-Fru.
     
 0.446
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
       0.444
xynD_3
Arabinoxylan arabinofuranohydrolase precursor.
       0.433
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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