Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUQ83473.1 | CUQ83483.1 | ERS852540_00694 | ERS852540_00696 | Uncharacterized protein conserved in bacteria. | Stage III sporulation protein AC. | 0.983 |
CUQ83473.1 | CUQ83492.1 | ERS852540_00694 | ERS852540_00698 | Uncharacterized protein conserved in bacteria. | Stage III sporulation protein AE. | 0.969 |
CUQ83473.1 | CUQ84154.1 | ERS852540_00694 | ERS852540_00815 | Uncharacterized protein conserved in bacteria. | Stage II sporulation protein P. | 0.872 |
CUQ83473.1 | CUQ86975.1 | ERS852540_00694 | ERS852540_01407 | Uncharacterized protein conserved in bacteria. | Stage II sporulation protein R. | 0.849 |
CUQ83473.1 | spo0A | ERS852540_00694 | ERS852540_01780 | Uncharacterized protein conserved in bacteria. | Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.801 |
CUQ83473.1 | spoIIAB | ERS852540_00694 | ERS852540_00367 | Uncharacterized protein conserved in bacteria. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.763 |
CUQ83473.1 | spoIIE | ERS852540_00694 | ERS852540_00797 | Uncharacterized protein conserved in bacteria. | Stage II sporulation protein E. | 0.831 |
CUQ83473.1 | spoIIID | ERS852540_00694 | ERS852540_01538 | Uncharacterized protein conserved in bacteria. | 14 kDa transcription factor. | 0.862 |
CUQ83473.1 | spoIVA | ERS852540_00694 | ERS852540_00677 | Uncharacterized protein conserved in bacteria. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.897 |
CUQ83473.1 | spoVT | ERS852540_00694 | ERS852540_00189 | Uncharacterized protein conserved in bacteria. | Stage V sporulation protein T. | 0.835 |
CUQ83483.1 | CUQ83473.1 | ERS852540_00696 | ERS852540_00694 | Stage III sporulation protein AC. | Uncharacterized protein conserved in bacteria. | 0.983 |
CUQ83483.1 | CUQ83492.1 | ERS852540_00696 | ERS852540_00698 | Stage III sporulation protein AC. | Stage III sporulation protein AE. | 0.987 |
CUQ83483.1 | CUQ84154.1 | ERS852540_00696 | ERS852540_00815 | Stage III sporulation protein AC. | Stage II sporulation protein P. | 0.842 |
CUQ83483.1 | CUQ86975.1 | ERS852540_00696 | ERS852540_01407 | Stage III sporulation protein AC. | Stage II sporulation protein R. | 0.774 |
CUQ83483.1 | spo0A | ERS852540_00696 | ERS852540_01780 | Stage III sporulation protein AC. | Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.697 |
CUQ83483.1 | spoIIAB | ERS852540_00696 | ERS852540_00367 | Stage III sporulation protein AC. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.612 |
CUQ83483.1 | spoIIE | ERS852540_00696 | ERS852540_00797 | Stage III sporulation protein AC. | Stage II sporulation protein E. | 0.765 |
CUQ83483.1 | spoIIID | ERS852540_00696 | ERS852540_01538 | Stage III sporulation protein AC. | 14 kDa transcription factor. | 0.850 |
CUQ83483.1 | spoIVA | ERS852540_00696 | ERS852540_00677 | Stage III sporulation protein AC. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.812 |
CUQ83483.1 | spoVT | ERS852540_00696 | ERS852540_00189 | Stage III sporulation protein AC. | Stage V sporulation protein T. | 0.766 |
page 1 of 6