STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUQ88269.1Sortase (surface protein transpeptidase). (461 aa)    
Predicted Functional Partners:
CUQ88262.1
sortase%2C SrtB family.
 
    
0.719
thiI
Probable tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
     0.687
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
      0.677
CUQ88265.1
sortase%2C SrtB family.
 
    
0.665
CUQ88259.1
sortase%2C SrtB family.
 
    
0.609
iscS
Cysteine desulfurase.
       0.592
CUQ82982.1
Predicted membrane protein.
  
     0.551
CUQ87926.1
Predicted membrane protein.
  
     0.519
CUQ88256.1
H-34.
      0.511
CUQ80774.1
Replication initiation/membrane attachment protein.
  
     0.430
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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