Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B0T39_01160 | B0T39_06730 | GCA_000758475_02464 | GCA_000758475_01398 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein. | 0.626 |
B0T39_01160 | B0T39_06735 | GCA_000758475_02464 | GCA_000758475_01397 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein. | 0.731 |
B0T39_01160 | GCA_000758475_01717 | GCA_000758475_02464 | GCA_000758475_01717 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein. | 0.715 |
B0T39_01160 | KdtA | GCA_000758475_02464 | GCA_000758475_03728 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.891 |
B0T39_01160 | lpxB | GCA_000758475_02464 | GCA_000758475_04450 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.884 |
B0T39_01160 | lpxC | GCA_000758475_02464 | GCA_000758475_02844 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.885 |
B0T39_01160 | lpxD | GCA_000758475_02464 | GCA_000758475_04453 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.886 |
B0T39_01160 | lpxK | GCA_000758475_02464 | GCA_000758475_02483 | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.892 |
B0T39_05660 | B0T39_06730 | GCA_000758475_01946 | GCA_000758475_01398 | Unannotated protein. | Unannotated protein. | 0.574 |
B0T39_05660 | B0T39_06735 | GCA_000758475_01946 | GCA_000758475_01397 | Unannotated protein. | Unannotated protein. | 0.571 |
B0T39_06730 | B0T39_01160 | GCA_000758475_01398 | GCA_000758475_02464 | Unannotated protein. | Unannotated protein; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.626 |
B0T39_06730 | B0T39_05660 | GCA_000758475_01398 | GCA_000758475_01946 | Unannotated protein. | Unannotated protein. | 0.574 |
B0T39_06730 | B0T39_06735 | GCA_000758475_01398 | GCA_000758475_01397 | Unannotated protein. | Unannotated protein. | 0.977 |
B0T39_06730 | GCA_000758475_01717 | GCA_000758475_01398 | GCA_000758475_01717 | Unannotated protein. | Unannotated protein. | 0.717 |
B0T39_06730 | KdtA | GCA_000758475_01398 | GCA_000758475_03728 | Unannotated protein. | Unannotated protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.961 |
B0T39_06730 | lpxB | GCA_000758475_01398 | GCA_000758475_04450 | Unannotated protein. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.691 |
B0T39_06730 | lpxC | GCA_000758475_01398 | GCA_000758475_02844 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.574 |
B0T39_06730 | lpxD | GCA_000758475_01398 | GCA_000758475_04453 | Unannotated protein. | Unannotated protein; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.646 |
B0T39_06730 | lpxK | GCA_000758475_01398 | GCA_000758475_02483 | Unannotated protein. | Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.615 |
B0T39_06730 | metK | GCA_000758475_01398 | GCA_000758475_01399 | Unannotated protein. | Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.626 |
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