STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0T39_09760Unannotated protein. (167 aa)    
Predicted Functional Partners:
rpmF
Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family.
 
  
 0.975
rpsC
Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.940
priB
Unannotated protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
    0.879
rplK
Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.865
rplD
Unannotated protein; Forms part of the polypeptide exit tunnel.
  
    0.851
rplA
Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
  
 0.850
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
  
    0.847
rpsB
Unannotated protein; Belongs to the universal ribosomal protein uS2 family.
  
    0.846
rplU
Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.844
infC
Unannotated protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
    0.841
Your Current Organism:
Chromobacterium haemolyticum
NCBI taxonomy Id: 394935
Other names: C. haemolyticum, CCUG 53230, Chromobacterium haemolyticum Han et al. 2008, DSM 19808, JCM 14163, strain MDA0585
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.