STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA60265.1Hypothetical protein. (466 aa)    
Predicted Functional Partners:
SKA61789.1
Putative ABC transport system permease protein.
  
 
 0.960
SKA63376.1
Putative ABC transport system permease protein.
  
 
 0.960
SKA65553.1
Fibronectin type III domain-containing protein.
  
 0.926
SKA65557.1
Fibronectin type III domain-containing protein.
  
 0.926
SKA68629.1
Hypothetical protein.
  
 0.926
SKA60279.1
Penicillin-binding protein 2.
 
  
 0.851
SKA60282.1
Rod shape-determining protein MreD.
 
     0.841
SKA69833.1
Putative ABC transport system permease protein.
  
 
 0.809
SKA60264.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.785
SKA59610.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Eubacterium uniforme
NCBI taxonomy Id: 39495
Other names: ATCC 35992, E. uniforme, strain X3C39
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