STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA67552.1LytTr DNA-binding domain-containing protein. (150 aa)    
Predicted Functional Partners:
SKA63072.1
Two-component system, sensor histidine kinase YesM.
 
 0.695
SKA67548.1
Hypothetical protein.
       0.655
SKA67556.1
mRNA interferase YafQ.
       0.523
SKA67561.1
DNA-damage-inducible protein J.
       0.523
SKA71318.1
LytTr DNA-binding domain-containing protein.
  
     0.445
SKA71061.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.442
SKA60178.1
FtsX-like permease family protein.
  
     0.425
SKA72027.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
  0.420
SKA71221.1
Catechol 2,3-dioxygenase.
  
     0.405
SKA69585.1
Two-component system, sensor histidine kinase YesM.
  
 
  0.403
Your Current Organism:
Eubacterium uniforme
NCBI taxonomy Id: 39495
Other names: ATCC 35992, E. uniforme, strain X3C39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.