Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA62663.1 | SKA71397.1 | SAMN02745111_00669 | SAMN02745111_02212 | Phosphopantetheine attachment site. | seryl-tRNA synthetase. | 0.911 |
SKA62663.1 | thrS | SAMN02745111_00669 | SAMN02745111_01869 | Phosphopantetheine attachment site. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.435 |
SKA63431.1 | SKA71397.1 | SAMN02745111_00830 | SAMN02745111_02212 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | seryl-tRNA synthetase. | 0.676 |
SKA63431.1 | metG | SAMN02745111_00830 | SAMN02745111_01489 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.514 |
SKA71397.1 | SKA62663.1 | SAMN02745111_02212 | SAMN02745111_00669 | seryl-tRNA synthetase. | Phosphopantetheine attachment site. | 0.911 |
SKA71397.1 | SKA63431.1 | SAMN02745111_02212 | SAMN02745111_00830 | seryl-tRNA synthetase. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.676 |
SKA71397.1 | acpP | SAMN02745111_02212 | SAMN02745111_00276 | seryl-tRNA synthetase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.911 |
SKA71397.1 | acpP-2 | SAMN02745111_02212 | SAMN02745111_01200 | seryl-tRNA synthetase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.911 |
SKA71397.1 | argS | SAMN02745111_02212 | SAMN02745111_00104 | seryl-tRNA synthetase. | arginyl-tRNA synthetase. | 0.680 |
SKA71397.1 | lysS | SAMN02745111_02212 | SAMN02745111_01186 | seryl-tRNA synthetase. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.671 |
SKA71397.1 | metG | SAMN02745111_02212 | SAMN02745111_01489 | seryl-tRNA synthetase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.692 |
SKA71397.1 | thrS | SAMN02745111_02212 | SAMN02745111_01869 | seryl-tRNA synthetase. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.669 |
SKA71397.1 | trpS | SAMN02745111_02212 | SAMN02745111_01259 | seryl-tRNA synthetase. | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.652 |
SKA71397.1 | valS | SAMN02745111_02212 | SAMN02745111_00037 | seryl-tRNA synthetase. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.701 |
acpP | SKA71397.1 | SAMN02745111_00276 | SAMN02745111_02212 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | seryl-tRNA synthetase. | 0.911 |
acpP | thrS | SAMN02745111_00276 | SAMN02745111_01869 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.435 |
acpP-2 | SKA71397.1 | SAMN02745111_01200 | SAMN02745111_02212 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | seryl-tRNA synthetase. | 0.911 |
acpP-2 | thrS | SAMN02745111_01200 | SAMN02745111_01869 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.435 |
argS | SKA71397.1 | SAMN02745111_00104 | SAMN02745111_02212 | arginyl-tRNA synthetase. | seryl-tRNA synthetase. | 0.680 |
argS | lysS | SAMN02745111_00104 | SAMN02745111_01186 | arginyl-tRNA synthetase. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.948 |
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