STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI53381.1PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000476 probable cold shock protein. (69 aa)    
Predicted Functional Partners:
ACI56552.1
PFAM: 4-oxalocrotonate tautomerase; KEGG: ret:RHE_CH03539 hypothetical protein.
      
 0.727
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.506
ACI53380.1
KEGG: ret:RHE_CH00434 hypothetical protein.
       0.493
ACI53379.1
KEGG: ret:RHE_CH00433 hypothetical protein.
       0.492
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
 
 0.465
rpmJ
KEGG: rec:RHECIAT_CH0003783 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.444
rpmH
PFAM: ribosomal protein L34; KEGG: rec:RHECIAT_CH0000480 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
   0.438
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.429
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.421
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.415
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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