STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI55879.1PFAM: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0003012 molecular chaperone protein, DnaJ family. (235 aa)    
Predicted Functional Partners:
ACI55133.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: rec:RHECIAT_CH0002288 nitrogen fixation protein.
  
 
 0.989
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.824
ACI55878.1
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: ret:RHE_CH02860 probable N-acetylmuramoyl-L-alanine amidase protein.
     
 0.823
ACI54231.1
KEGG: rec:RHECIAT_CH0001399 molecular chaperone heat shock protein (HSP70).
  
 
 0.799
ACI55186.1
PFAM: aminotransferase class V; KEGG: rec:RHECIAT_CH0002363 cysteine desulfurase protein (nitrogenase cofactor synthesis protein).
  
 
 0.776
ACI54772.1
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0001902 hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.728
ACI55179.1
TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0002356 hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.728
ACI55224.1
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ret:RHE_CH02304 glutaredoxin protein; Belongs to the glutaredoxin family. Monothiol subfamily.
     
 0.601
ACI53487.1
KEGG: ret:RHE_CH00534 hypothetical protein.
  
     0.526
ACI55258.1
PFAM: ferredoxin; KEGG: ret:RHE_CH02338 ferredoxin, 2Fe-2S FDII electron transport iron-sulfur protein.
  
  
 0.467
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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