STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI56017.1PFAM: helix-turn-helix HxlR type; transcriptional regulator PadR family protein; KEGG: ret:RHE_CH03008 putative transcriptional regulator protein. (119 aa)    
Predicted Functional Partners:
ACI53856.1
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: rec:RHECIAT_CH0001001 putative transcriptional regulator protein.
  
     0.774
ACI55043.1
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: rec:RHECIAT_CH0002173 probable transcriptional regulator protein.
  
     0.773
ACI56016.1
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003164 putative 3-oxoacyl-[acyl-carrier-protein] reductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.534
ACI55785.1
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: ret:RHE_CH02768 hypothetical protein.
 
     0.419
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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