STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI56093.1TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rec:RHECIAT_CH0003243 proline/glycine betaine ABC transporter, substrate-binding protein. (318 aa)    
Predicted Functional Partners:
ACI56094.1
TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03086 proline/glycine betaine ABC transporter, permease protein.
 
 0.999
ACI56095.1
KEGG: rec:RHECIAT_CH0003245 proline/glycine betaine ABC transporter, ATP-binding protein; TIGRFAM: choline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
ACI56187.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_PF00410 probable amino acid ABC transporter, substrate-binding protein.
  
  
  0.913
ACI55421.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_CH02495 putative amino acid ABC transporter, substrate-binding protein.
     
  0.900
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.743
ACI55269.1
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: rec:RHECIAT_CH0002446 probable ABC transporter, permease protein.
  
  
 0.557
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.520
ACI56096.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0003246 hypothetical protein.
       0.503
tdk
PFAM: thymidine kinase; KEGG: rec:RHECIAT_CH0003242 thymidine kinase protein.
       0.496
ACI56624.1
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: rec:RHECIAT_CH0003871 sarcosine oxidase protein, delta subunit.
 
    0.441
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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