Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACI56270.1PFAM: ABC-2 type transporter; KEGG: ret:RHE_CH03253 probable ABC transporter, permease protein. (370 aa)    
Predicted Functional Partners:
ACI56268.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003496 probable ABC transporter, ATP-binding protein.
  
 0.997
ACI56267.1
PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03250 hypothetical protein.
 
  
 0.957
ACI55373.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH02452 multidrug ABC transporter, ATP-binding protein.
 
  
 0.926
ACI56266.1
PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: rec:RHECIAT_CH0003494 probable transcriptional regulator protein, TetR family.
 
     0.844
ACI56269.1
PFAM: ABC-2 type transporter; KEGG: rec:RHECIAT_CH0003497 probable ABC transporter, permease protein.
 
    
0.830
ACI55500.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH01150 putative ABC transporter, ATP-binding protein.
      0.693
ACI53445.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000554 probable proline/glycine betaine ABC transporter, ATP-binding protein.
      0.684
ACI55268.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002445 probable ABC transporter, ATP-binding protein.
      0.673
ACI53350.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000445 probable amino acid ABC transporter, ATP-binding protein.
      0.669
ACI56225.1
PFAM: protein of unknown function DUF181; KEGG: rec:RHECIAT_CH0003447 hypothetical protein.
  
  
 0.604
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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